tag:blogger.com,1999:blog-8580662279885053562012-02-16T03:27:23.865-08:00Developing Biological databases and applications using Ruby on rails framework.George and Computershttp://www.blogger.com/profile/04559856394570551469noreply@blogger.comBlogger31100tag:blogger.com,1999:blog-858066227988505356.post-89246365714904045962007-03-23T16:46:00.000-07:002007-03-23T16:58:04.320-07:00These are open source schemata. To get the latest, please visit the their respective cvs repositories.<br /><ul><li>GMOD's chado database schema</li><ul><li>runs on postgres database system</li></ul><li>BioSQL</li><ul><li>available for both mySQL and postgres</li></ul></ul>Note that these schemata lean heavily on perl and bioperl modules.<br /><br />Am happy if you can join me in creating table/object relation mapping for chado using rails' active record. My goal is to have features or entities in chado map to bioruby objects/classes, currently am developing that for the features table.<div class="blogger-post-footer"><img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/858066227988505356-8924636571490404596?l=biorails.blogspot.com' alt='' /></div>George and Computershttp://www.blogger.com/profile/04559856394570551469noreply@blogger.com3tag:blogger.com,1999:blog-858066227988505356.post-24171225118589592882007-03-23T12:56:00.000-07:002007-03-23T23:03:28.494-07:00<ul><li><a href="http://www.aptana.com/download_radrails.php">Radrails </a>(Available as an eclipse plugin or as standalone)</li></ul><ul><li><p>The eclipse update site is available at</p> <p><span class="postbody"> <a target="_blank" href="http://radrails.sourceforge.net/update">http://radrails.sourceforge.net/update</a> </span></p></li></ul><ul><li>Aptana +Radrails (the combined application will be available from April)</li></ul> for now radrails is available as a plugin<br /><ul><li>Netbeans 6( not officially released but if you fancy life on the edge you can give it try and hopefully give bug feedback to netbeans!)</li></ul><div class="blogger-post-footer"><img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/858066227988505356-2417122511858959288?l=biorails.blogspot.com' alt='' /></div>George and Computershttp://www.blogger.com/profile/04559856394570551469noreply@blogger.com0tag:blogger.com,1999:blog-858066227988505356.post-90347232081289093662007-03-23T12:53:00.000-07:002007-03-23T12:56:31.129-07:00Ruby Development Tools<br />Ruby on Rails<br />BioRuby<div class="blogger-post-footer"><img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/858066227988505356-9034723208128909366?l=biorails.blogspot.com' alt='' /></div>George and Computershttp://www.blogger.com/profile/04559856394570551469noreply@blogger.com0